Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs58286192 chr11:68204021 A/AC 4.24E-8 486 29.4 33.48 26.3 KM Plot
PRAD rs58296003 chr15:68612077 C/T 0.000169 481 31.13 31.62 22.95 KM Plot
PRAD rs58325288 chr2:178473139 CA/C 0.00019 479 22.6 31.65 30.73 KM Plot
PRAD rs58383367 chr20:430281 A/G 7.05E-8 493 31.27 24.13 21.2 KM Plot
PRAD rs58425212 chr14:32677853 C/T 0.000135 492 31.13 29.1 28.62 KM Plot
PRAD rs5844333 chr22:18430506 T/TA 3.31E-5 482 29.23 32.98 26.37 KM Plot
PRAD rs5844334 chr22:18445022 G/GACA 3.96E-6 494 30.8 31.87 26.37 KM Plot
PRAD rs5844336 chr22:18450123 CA/C 3.0E-6 488 30.8 31.93 27.08 KM Plot
PRAD rs5844337 chr22:18450196 TCA/T 3.0E-6 488 30.8 31.93 27.08 KM Plot
PRAD rs58449306 chr5:138027271 AT/A 8.14E-6 494 30.8 31.27 25.2 KM Plot
PRAD rs58482349 chr16:5006501 TCA/T 0.000148 484 31.27 29.95 26.37 KM Plot
PRAD rs58508715 chr11:6951596 T/C 7.62E-8 487 31.07 28.62 28.57 KM Plot
PRAD rs58511951 chr17:62976405 T/G 8.78E-9 489 30.8 31.37 19.63 KM Plot
PRAD rs58621232 chr13:24959104 T/C 0.000127 487 29.18 32.7 27.03 KM Plot
PRAD rs58645952 chr17:58185224 C/T 1.76E-5 494 30.8 31 26.93 KM Plot